Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Spata31f1d ENSMUSG00000078746

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Description

spermatogenesis associated 31 subfamily F member 1D [Source:MGI Symbol;Acc:MGI:5434294]

Gene Synonyms

Fam205a4, Gm20938

Location

Chromosome 4: 41,966,055-41,976,156 forward strand.

GRCm39:CM000997.3

About this gene

This gene has 3 transcripts (splice variants), 116 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000108026.3	Spata31f1d-201	4130	1308aa	ENSMUSP00000103661.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C0HKD1 C0HKD2 C0HKD3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000580468.1	Spata31f1d-202	704	68aa	ENSMUSP00000358831.1	Nonsense mediated decay		-	-
ENSMUST00000584941.1	Spata31f1d-203	656	162aa	ENSMUSP00000363306.1	Nonsense mediated decay		-	-

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Summary

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