Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: AI854703 ENSMUSG00000053297

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Description

expressed sequence AI854703 [Source:MGI Symbol;Acc:MGI:2141510]

Location

Chromosome 6: 48,603,578-48,610,626 forward strand.

GRCm39:CM000999.3

About this gene

This gene has 8 transcripts (splice variants), 44 orthologues and 104 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000095938.11	AI854703-201	3521	203aa	ENSMUSP00000145982.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8BIN3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000154570.2	AI854703-202	3806	203aa	ENSMUSP00000145812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8BIN3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000203088.3	AI854703-203	486	102aa	ENSMUSP00000145635.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RNN3	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000204958.2	AI854703-204	376	102aa	ENSMUSP00000145967.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RNN3	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000484364.1	AI854703-205	3480	203aa	ENSMUSP00000262727.1	Nonsense mediated decay		-	-
ENSMUST00000484366.1	AI854703-207	3410	203aa	ENSMUSP00000262729.1	Nonsense mediated decay		-	-
ENSMUST00000484367.1	AI854703-208	3252	203aa	ENSMUSP00000262730.1	Nonsense mediated decay		-	-
ENSMUST00000484365.1	AI854703-206	3235	203aa	ENSMUSP00000262728.1	Nonsense mediated decay		-	-

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Summary

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