Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Slc36a4 ENSMUSG00000043885

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Description

solute carrier family 36 (proton/amino acid symporter), member 4 [Source:MGI Symbol;Acc:MGI:2442595]

Gene Synonyms

6330573I15Rik, PAT4

Location

Chromosome 9: 15,620,817-15,654,830 forward strand.

GRCm39:CM001002.3

About this gene

This gene has 14 transcripts (splice variants), 195 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000061568.10	Slc36a4-201	6561	500aa	ENSMUSP00000057355.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22840	A0A0R4J0Q3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000383431.1	Slc36a4-208	6558	499aa	ENSMUSP00000161794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000115588.9	Slc36a4-202	6548	404aa	ENSMUSP00000111251.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z0L1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000383427.1	Slc36a4-204	6901	108aa	ENSMUSP00000161790.1	Nonsense mediated decay		-	-
ENSMUST00000383437.1	Slc36a4-214	5656	106aa	ENSMUSP00000161800.1	Nonsense mediated decay		-	-
ENSMUST00000383430.1	Slc36a4-207	5590	108aa	ENSMUSP00000161793.1	Nonsense mediated decay		-	-
ENSMUST00000383429.1	Slc36a4-206	5546	108aa	ENSMUSP00000161792.1	Nonsense mediated decay		-	-
ENSMUST00000383433.1	Slc36a4-210	5540	108aa	ENSMUSP00000161796.1	Nonsense mediated decay		-	-
ENSMUST00000383435.1	Slc36a4-212	5535	107aa	ENSMUSP00000161798.1	Nonsense mediated decay		-	-
ENSMUST00000383428.1	Slc36a4-205	5524	88aa	ENSMUSP00000161791.1	Nonsense mediated decay		-	-
ENSMUST00000383436.1	Slc36a4-213	5467	108aa	ENSMUSP00000161799.1	Nonsense mediated decay		-	-
ENSMUST00000383432.1	Slc36a4-209	5452	130aa	ENSMUSP00000161795.1	Nonsense mediated decay		-	-
ENSMUST00000383434.1	Slc36a4-211	5354	46aa	ENSMUSP00000161797.1	Nonsense mediated decay		-	-
ENSMUST00000214954.2	Slc36a4-203	855	140aa	ENSMUSP00000149875.2	Nonsense mediated decay		A0A1L1SSD8	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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