Description

sodium channel, voltage-gated, type V, alpha [Source:MGI Symbol;Acc:MGI:98251]

INSDC coordinates

chromosome:GRCm38:CM001002.2:119483408:119579016:1

Transcripts



This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Scn5a-001ENSMUST0000011791184532020 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS52965D3YXW2 Q6EWG4 Q9JJV9
NM_021544
NP_067519
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence) [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Scn5a-201ENSMUST0000006519682872020 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57715D3YXW2 K3W4N7 Q6EWG4
NM_001253860
NP_001240789
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence) [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Scn5a-002ENSMUST0000012042075362019 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YXW2 Q6EWG3 Q9JJV9
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Scn5a-003ENSMUST0000013893435929 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YXW2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays