Description

syntaxin 16 [Source:MGI Symbol;Acc:MGI:1923396]

INSDC coordinates

chromosome:GRCm38:CM000995.2:174076308:174099771:1

Transcripts



This gene has 6 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Stx16-001ENSMUST000000879083865326 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17147B7ZCB8 B7ZCB9 Q0VGN4
Q8BVI5 Q8C0W8
NM_001102424
NM_172675
NP_001095894
NP_766263
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI3APPRIS candidate principal isoform (CCDS) [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Stx16-201ENSMUST000000446383731327 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB8 B7ZCB9 F6X4N5
Q8C0W8
NM_001102423
NM_001102425
NP_001095893
NP_001095895
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Stx16-005ENSMUST00000156054773258 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB8 B7ZCB9 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Stx16-003ENSMUST00000147038647164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB8 B7ZCB9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Stx16-004ENSMUST0000015500035689 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Stx16-002ENSMUST0000013487623533 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays