Description

gamma-glutamyltransferase 1 [Source:MGI Symbol;Acc:MGI:95706]

Location
INSDC coordinates

chromosome:GRCm38:CM001003.2:75561604:75586200:1

Transcripts



This gene has 20 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Ggt1-002ENSMUST000000065082167568 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23927D3YVX1 D3YVY4 D3YWW2
D3YWW4 D3YWZ7 D3YXV6
D3YY79 D3YYH6 D3Z266
D3Z2C6 D3Z4Q6 Q4FK56
Q60928
NM_008116
NP_032142
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Ggt1-001ENSMUST000001345032140568 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23927D3YVX1 D3YVY4 D3YWW2
D3YWW4 D3YWZ7 D3YXV6
D3YY79 D3YYH6 D3Z266
D3Z2C6 D3Z4Q6 Q4FK56
Q60928
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Ggt1-013ENSMUST00000124259962235 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWW2 D3YWW4
D3YWZ7 D3YXV6 D3YY79
D3YYH6 D3Z2C6 D3Z4Q6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-006ENSMUST00000143792909237 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YVY4 D3YWW2
D3YWW4 D3YWZ7 D3YXV6
D3YY79 D3YYH6 D3Z2C6
D3Z4Q6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-008ENSMUST00000145928907210 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWW2 D3YWW4
D3YWZ7 D3YXV6 D3YY79
D3YYH6 D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-012ENSMUST00000143226834190 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWW2 D3YWW4
D3YWZ7 D3YXV6 D3YYH6
D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-014ENSMUST00000139459792243 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YVY4 D3YWW2
D3YWW4 D3YWZ7 D3YXV6
D3YY79 D3YYH6 D3Z266
D3Z2C6 D3Z4Q6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-016ENSMUST00000129020787263 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-019ENSMUST00000129232767189 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWW2 D3YWZ7
D3YXV6 D3YYH6 D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-005ENSMUST00000140219758126 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWZ7 D3YXV6
D3YYH6 D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-007ENSMUST0000012577072488 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWZ7 D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-018ENSMUST00000155186700130 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-004ENSMUST00000145079676110 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWZ7 D3YYH6
D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-003ENSMUST00000152657666110 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWZ7 D3YYH6
D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-010ENSMUST00000131565647126 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWZ7 D3YXV6
D3YYH6 D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-011ENSMUST00000128886630126 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVX1 D3YWZ7 D3YXV6
D3YYH6 D3Z2C6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-009ENSMUST0000015121253160 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YWZ7 D3Z2C6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-020ENSMUST0000014106242930 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YWZ7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-015ENSMUST00000148447551No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ggt1-017ENSMUST00000156487820No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays